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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="other" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Head and Neck Tumors</journal-id><journal-title-group><journal-title xml:lang="en">Head and Neck Tumors</journal-title><trans-title-group xml:lang="ru"><trans-title>Опухоли головы и шеи</trans-title></trans-title-group></journal-title-group><issn publication-format="print">2222-1468</issn><issn publication-format="electronic">2411-4634</issn><publisher><publisher-name xml:lang="en">Publishing House ABV Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">612</article-id><article-id pub-id-type="doi">10.17650/2222-1468-2021-11-1-78-85</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>ORIGINAL REPORT</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>ОРИГИНАЛЬНОЕ ИССЛЕДОВАНИЕ</subject></subj-group><subj-group subj-group-type="article-type"><subject></subject></subj-group></article-categories><title-group><article-title xml:lang="en">Mutation profile of the tall cell variant of papillary thyroid carcinoma: analysis of 5 cases using wide-panel next-generation sequencing</article-title><trans-title-group xml:lang="ru"><trans-title>Мутационный профиль папиллярного рака щитовидной железы из высоких клеток: результаты анализа 5 случаев с использованием широкопанельного таргетного секвенирования</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6600-0933</contrib-id><name-alternatives><name xml:lang="en"><surname>Plaksa</surname><given-names>I. L.</given-names></name><name xml:lang="ru"><surname>Плакса</surname><given-names>И. Л.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>37 Liteyny Ave., St. Petersburg 191014; Bld. 1, 3 Gubkina St., Moscow 119333</p></bio><bio xml:lang="ru"><p>191014 Санкт-Петербург, Литейный проспект, 37; 119333 Москва, ул. Губкина, 3, корп. 1</p></bio><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6684-2532</contrib-id><name-alternatives><name xml:lang="en"><surname>Savchuk</surname><given-names>M. R.</given-names></name><name xml:lang="ru"><surname>Савчук</surname><given-names>М. Р.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Maria Ruslanovna Savchuk</p><p>Bld. 1, 3 Gubkina St., Moscow 119333; 9 Vysokovoltnaya St., Ryazan 390026</p></bio><bio xml:lang="ru"><p>Мария Руслановна Савчук</p><p>119333 Москва, ул. Губкина, 3, корп. 1; 390026 Рязань, ул. Высоковольтная, 9</p></bio><email>savchuk@genetico.ru</email><xref ref-type="aff" rid="aff2"/><xref ref-type="aff" rid="aff3"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6462-1875</contrib-id><name-alternatives><name xml:lang="en"><surname>Shved</surname><given-names>N. V.</given-names></name><name xml:lang="ru"><surname>Швед</surname><given-names>Н. В.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>41 Kirochnaya St., St. Petersburg 191015</p></bio><bio xml:lang="ru"><p>191015Санкт-Петербург, ул. Кирочная, 41</p></bio><xref ref-type="aff" rid="aff4"/></contrib><contrib contrib-type="author"><name-alternatives><name xml:lang="en"><surname>Savelov</surname><given-names>N. A.</given-names></name><name xml:lang="ru"><surname>Савелов</surname><given-names>Н. А.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>27, Istra 143423, Stepanovskoye Stlmt, Krasnogorsky Dstr., Moscow Region</p></bio><bio xml:lang="ru"><p>Московская область, Красногорский р-н, п/о Степановское, 143423 Истра, 27</p></bio><xref ref-type="aff" rid="aff5"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-4673-1031</contrib-id><name-alternatives><name xml:lang="en"><surname>Khmelkova</surname><given-names>D. N.</given-names></name><name xml:lang="ru"><surname>Хмелькова</surname><given-names>Д. Н.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Bld. 1, 3 Gubkina St., Moscow 119333</p></bio><bio xml:lang="ru"><p>119333 Москва, ул. Губкина, 3, корп. 1</p></bio><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-5848-5117</contrib-id><name-alternatives><name xml:lang="en"><surname>Isaev</surname><given-names>А. A.</given-names></name><name xml:lang="ru"><surname>Исаев</surname><given-names>А. А.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Bld. 1, 3 Gubkina St., Moscow 119333</p></bio><bio xml:lang="ru"><p>119333 Москва, ул. Губкина, 3, корп. 1</p></bio><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-8389-3841</contrib-id><name-alternatives><name xml:lang="en"><surname>Deev</surname><given-names>R. V.</given-names></name><name xml:lang="ru"><surname>Деев</surname><given-names>Р. В.</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>41 Kirochnaya St., St. Petersburg 191015</p></bio><bio xml:lang="ru"><p>191015Санкт-Петербург, ул. Кирочная, 41</p></bio><xref ref-type="aff" rid="aff4"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">Leningrad Regional Clinical Oncological Dispensary</institution></aff><aff><institution xml:lang="ru">ГБУЗ Ленинградский областной клинический онкологический диспансер</institution></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="en">Center of Genetics and Reproductive Medicine Genetico</institution></aff><aff><institution xml:lang="ru">Центр генетики и репродуктивной медицины Генетико, ООО</institution></aff></aff-alternatives><aff-alternatives id="aff3"><aff><institution xml:lang="en">I.P. Pavlov Ryazan State Medical University, Ministry of Health of Russia</institution></aff><aff><institution xml:lang="ru">ФГБОУ ВО Рязанский государственный медицинский университет им. акад. И.П. Павлова Минздрава России</institution></aff></aff-alternatives><aff-alternatives id="aff4"><aff><institution xml:lang="en">North-Western State Medical University n. a. I.I. Mechnikov, Ministry of Health of Russia</institution></aff><aff><institution xml:lang="ru">ФГБОУ ВО Северо-Западный государственный медицинский университет им. И.И. Мечникова Минздрава России</institution></aff></aff-alternatives><aff-alternatives id="aff5"><aff><institution xml:lang="en">Moscow City Oncological Hospital No. 62, Moscow Healthcare Department</institution></aff><aff><institution xml:lang="ru">ГБУЗ Московская городская онкологическая больница № 62 Департамента здравоохранения г. Москвы</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2021-04-24" publication-format="electronic"><day>24</day><month>04</month><year>2021</year></pub-date><volume>11</volume><issue>1</issue><issue-title xml:lang="en"/><issue-title xml:lang="ru"/><fpage>78</fpage><lpage>85</lpage><history><date date-type="received" iso-8601-date="2021-04-23"><day>23</day><month>04</month><year>2021</year></date><date date-type="accepted" iso-8601-date="2021-04-23"><day>23</day><month>04</month><year>2021</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2021, Plaksa I.L., Savchuk M.R., Shved N.V., Savelov N.A., Khmelkova D.N., Isaev А.A., Deev R.V.</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2021, Плакса И.Л., Савчук М.Р., Швед Н.В., Савелов Н.А., Хмелькова Д.Н., Исаев А.А., Деев Р.В.</copyright-statement><copyright-year>2021</copyright-year><copyright-holder xml:lang="en">Plaksa I.L., Savchuk M.R., Shved N.V., Savelov N.A., Khmelkova D.N., Isaev А.A., Deev R.V.</copyright-holder><copyright-holder xml:lang="ru">Плакса И.Л., Савчук М.Р., Швед Н.В., Савелов Н.А., Хмелькова Д.Н., Исаев А.А., Деев Р.В.</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by/4.0</ali:license_ref></license></permissions><self-uri xlink:href="https://ogsh.abvpress.ru/jour/article/view/612">https://ogsh.abvpress.ru/jour/article/view/612</self-uri><abstract xml:lang="en"><p><bold>The study objective</bold> is to analyze the mutation profile of the tall cell variant (TCV) of papillary thyroid carcinoma (PTC).</p><p><bold>Materials and methods.</bold> The main inclusion criteria according to the WHO classification (2017) was PTC composed of at least 30 % of tall cells. Genetic examination was conducted using the FoundationOne CDx assay (USA) with median depth of coverage of &gt;500x. This study included 5 patients (1 man and 4 women) with a mean age of 52.6 years (range: 48-56 years). The tumor size varied between 0.4 x 0.5 cm and 11.0 x 9.0 cm. All patients have undergone surgical treatment: hemithyroidectomy for patient No. 1 with a small tumor (pT1b); thyroidectomy for patient No. 2 (pT3b); extensive thyroidectomy with the removal of paratracheal tissue for patients No. 3, 4, and 5 (No. 3 - pT3bN0; No. 4 - pT3bN1b; No. 5 - pT3bN1b). Three out of the five patients also had adenomatous goiter. The mean follow-up time was 3.4 to 5.2 years.</p><p><bold>Results.</bold> Tumors in all patients were characterized by low mutational load (0 to 4 mutations per 1 million nucleotides (megabase)) and no microsatellite instability. All study participants were found to have p.V600E mutation in the BRAF gene; two patients had c.-124C&gt;T mutation in the promoter region of the TERT gene. All patients carried mutations with unknown clinical significance: p.V562I in the EPHB1 gene (in 2 patients); mutations in the genes AR, CREBBP, EP300, ERCC4, FLT1, IKBKE, JAK2, MAF, MLL2, MST1R, MYC, MYCL1, NTRK2, TSC2 (each mutation registered in one patient). One individual with the largest tumor and the most aggressive disease was found to have amplifications of the BTG2, MAP3K1, SMAD2, and TBX3 genes.</p><p><bold>Conclusion.</bold> In 5 patients analyzed in this study, the mutation profile of TCV PTC was characterized by low mutational load, no microsatellite instability, and presence of p.V600E mutation in the BRAF gene in all cases. Some patients also had c.-124C&gt;T mutation in the TERT gene and p.V562I mutation in the EPHB1 gene.</p></abstract><trans-abstract xml:lang="ru"><p><bold>Цель исследования</bold> - оценить мутационный профиль случаев папиллярного рака щитовидной железы из высоких клеток.</p><p><bold>Материалы и методы</bold>. Основным критерием включения в группу анализа было наличие высококлеточного компонента в количестве не менее 30 % от общего объема опухоли. Генетическое исследование выполнялось с использованием диагностического теста FoundationOne CDx (США) со средней глубиной покрытия &gt;500x. В исследование было включено 5 пациентов (1 мужчина и 4 женщины, средний возраст 52,6 года (48-56 лет)). Размеры опухоли варьировали от 0,4 х 0,5 до 11,0 х 9,0 см. Все пациенты получали оперативное лечение, у пациента № 1 ввиду небольшого размера узла была выполнена гемитиреоидэктомия (pT1b), у пациента 2 -тиреоидэктомия (pT3b), у пациентов № 3, 4 и 5 - расширенная тиреоидэктомия с удалением паратрахеальной клетчатки (№ 3 - pT3bN0; № 4 - pT3bN1b; № 5 - pT3bN1b). У 3 из 5 пациентов фоновым заболеванием был аденоматозный зоб. Наблюдение за пациентами продолжалось от 3,4 до 5,2 года.</p><p><bold>Результаты. </bold>Опухоли всех пациентов характеризовались низкой мутационной нагрузкой - от 0 до 4 мутаций на 1 млн нуклеотидов (мегабазу) и отсутствием микросателлитной нестабильности. У всех пациентов была выявлена мутация p.V600E в гене BRAF, у 2 пациентов была обнаружена мутация в промоторе гена TERT c.-124C&gt;T. У всех пациентов были выявлены мутации с неизвестным клиническим значением: p.V562I в гене EPHB1 (у 2 пациентов); мутации в генах AR, CREBBP, EP300, ERCC4, FLT1, IKBKE, JAK2, MAF, MLL2, MST1R, MYC, MYCL1, NTRK2, TSC2 (каждая из мутаций - у 1 пациента). У одного из пациентов с наибольшим размером опухоли и наиболее агрессивным течением были обнаружены амплификации генов BTG2, MAP3K1, SMAD2, TBX3.</p><p><bold>Заключение.</bold> В 5 изученных случаях мутационный профиль папиллярного рака из высоких клеток характеризуется низкой мутационной нагрузкой, отсутствием микросателлитной нестабильности и наличием во всех случаях мутации p.V600E гена BRAF, которая у части пациентов сочеталась с мутацией c.-124C&gt;T в гене TERT и p.V562I в гене EPHB1.</p></trans-abstract><kwd-group xml:lang="en"><kwd>tall cell variant of papillary thyroid carcinoma</kwd><kwd>BRAF</kwd><kwd>TERT</kwd><kwd>EPHB1</kwd><kwd>Foundation One</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>папиллярный рак щитовидной железы из высоких клеток</kwd><kwd>BRAF</kwd><kwd>TERT</kwd><kwd>EPHB1</kwd><kwd>Foundation One</kwd></kwd-group><funding-group/></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><citation-alternatives><mixed-citation xml:lang="en">1.	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